SFESA – Shift to Fix secondary structure ElementS in Alignments

SFESA

:: DESCRIPTION

SFESA is a tool to refine pairwise protein sequence alignment, with a combination of sequence and structural scoring by locally shifting secondary structure elements

::DEVELOPER

Grishin Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 SFESA

:: MORE INFORMATION

Citation:

Proteins. 2015 Mar;83(3):411-27. doi: 10.1002/prot.24746. Epub 2015 Jan 13.
Refinement by shifting secondary structure elements improves sequence alignments.
Tong J1, Pei J, Otwinowski Z, Grishin NV.

traitRate 201612 – Detection of Trait-dependent Shifts in the Rate of Sequence Evolution

traitRate 201612

:: DESCRIPTION

traitRate is a program for the detection of trait-dependent shifts in the rate of sequence evolution.

::DEVELOPER

Mayrose Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/ Linux

:: DOWNLOAD

  traitRate

:: MORE INFORMATION

Citation

Mayrose I and Otto SP. 2011.
A Likelihood Method for Detecting Trait-Dependent Shifts in the Rate of Molecular Evolution.
Mol Biol Evol. 28:781-791.