setsApp 2.2.0 – Save and Manipulate Sets of Nodes and Edges

setsApp 2.2.0

:: DESCRIPTION

SetsApp is a Cytoscape 3 app allowing the user to create and manipulate sets of nodes or edges (but not sets with both nodes and edges, at least in the current version) in Cytoscape. Sets can be created for different networks.

::DEVELOPER

setsApp team

:: SCREENSHOTS

setsApp

:: REQUIREMENTS

  • Windows/Linux/MacOsX
  • Java
  • Cytoscape

:: DOWNLOAD

 SetsApp

:: MORE INFORMATION

Citation

setsApp: Set operations for Cytoscape Nodes and Edges.
Morris JH, Wu A, Doncheva NT, Albrecht M, Ferrin TE.
F1000Res. 2014 Jul 1;3:149. doi: 10.12688/f1000research.4392.1.

Sets2Networks – Network Inference from Repeated Observations of Sets

Sets2Networks

:: DESCRIPTION

Sets2Networks (S2N) is general method for network inference from repeated observations of sets of related entities. Given experimental observations of sets of related entities, S2N infers the underlying network of binary interactions between these entities by generating an ensemble of networks consistent with the data; the frequency of occurrence of a given interaction throughout this ensemble is interpreted as the probability that the interaction is present in the underlying real network.

::DEVELOPER

Ma’ayan Laboratory

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

BMC Syst Biol. 2012 Jul 23;6:89. doi: 10.1186/1752-0509-6-89.
Sets2Networks: network inference from repeated observations of sets.
Clark NR, Dannenfelser R, Tan CM, Komosinski ME, Ma’ayan A.