Flux Capacitor 1.6.1 – Quantify Expressed Sequence Features from Transcriptome

Flux Capacitor 1.6.1

:: DESCRIPTION

The Flux Capacitor is a program to quantify expressed sequence features (e.g., genes or transcripts) from transcriptome interrogations by short read sequencing.

::DEVELOPER

Micha Sammeth

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ Windows/ MacOsX
  • Java

:: DOWNLOAD

 Flux Capacitor

:: MORE INFORMATION

Citation

Nature. 2010 Apr 1;464(7289):773-7. doi: 10.1038/nature08903. Epub 2010 Mar 10.
Transcriptome genetics using second generation sequencing in a Caucasian population.
Montgomery SB, Sammeth M, Gutierrez-Arcelus M, Lach RP, Ingle C, Nisbett J, Guigo R, Dermitzakis ET.

sefOri 1.0 – Selecting the best engineered sequence features to predict DNA Replication Origins

sefOri 1.0

:: DESCRIPTION

The software sefOri selects the subset of sequence features with the best prediction accuracies of the DNA replication origins for the four yeast genomes.

::DEVELOPER

Health Informatics Lab (HILab)

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows
  • Python
  • Visual Studio

:: DOWNLOAD

sefOri 

:: MORE INFORMATION

Citation

Bioinformatics. 2019 Jun 20. pii: btz506. doi: 10.1093/bioinformatics/btz506.
sefOri: selecting the best-engineered squence features to predict DNA replication origins.
Lou C, Zhao J, Shi R, Wang Q, Zhou W, Wang Y, Wang G, Huang L, Feng X, Zhou F

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