NPACT 2.3.1 – N-Profile Analysis Computational Tool

NPACT 2.3.1

:: DESCRIPTION

NPACT is a computational and graphical representation tool for gene identification and sequence annotation. NPACT identifies sequence segments of any length with statistically-significant 3-base compositional periodicities and associated with ORF structures .

::DEVELOPER

NPACT team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux / Windows/ MacOsX

:: DOWNLOAD

NPACT

:: MORE INFORMATION

Citation

Bioinformatics. 2015 Jun 4. pii: btv339.
Quantitative frame analysis and the annotation of GC-rich (and other) prokaryotic genomes. An application to Anaeromyxobacter dehalogenans.
Oden S, Brocchieri L

PDBpaint 20111209 – Tag Protein Structures with Sequence Annotations

PDBpaint 20111209

:: DESCRIPTION

PDBpaint is a simple tool that displays protein sequence features gathered from bioinformatics resources on top of protein structures, which are displayed in an interactive window (using the Jmol Java viewer). PDBpaint can be used either with existing protein structures or with novel structures provided by the user.

::DEVELOPER

Computational Biology and Data Mining (CBDM) Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux
Perl

:: DOWNLOAD

PDBpaint

:: MORE INFORMATION

Citation

Bioinformatics. 2011 Sep 15;27(18):2605-6. Epub 2011 Jul 14.
PDBpaint, a visualization webservice to tag protein structures with sequence annotations.
Fournier D, Andrade-Navarro MA.

Sma3s – Sequence Massive Annotation

Sma3s

:: DESCRIPTION

Sma3s (Sequence Massive Annotation With 3 modules) is a bioinformatics tool for the massive annotation of sequences coming from a ESTs or Unigene libraries as well as coding nucleotide or amino acid genomic sequences.

::DEVELOPER

Bioinformatics and Information Technologies LaboratoryUniversity of Malaga

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Windows/ linux /MacOsX
Blast
Perl
Bioperl

:: DOWNLOAD

Sma3s

:: MORE INFORMATION