Referee – Rapid, Separable Compression for Sequence Alignments

Referee

:: DESCRIPTION

Referee is a command-line tool that takes sequence alignment SAM files and compresses them in a lossless manner.

::DEVELOPER

Kingsford Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / MacOs

:: DOWNLOAD

Referee

:: MORE INFORMATION

Citation

Darya Filippova, Carl Kingsford (2015).
Rapid, separable compression enables fast analyses of sequence alignments.
Proceedings of the 6th ACM Conference on Bioinformatics, Computational Biology and Health Informatics, pages 194-201.

Skylign – Creating Logos Representing both Sequence Alignments and profile hidden Markov models

Skylign

:: DESCRIPTION

Skylign is a tool for creating logos representing both sequence alignments and profile hidden Markov models.

::DEVELOPER

Skylign team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Perl

:: DOWNLOAD

 Skylign

:: MORE INFORMATION

Citation

Skylign: a tool for creating informative, interactive logos representing sequence alignments and profile hidden Markov models.
Wheeler, T.J., Clements, J., Finn, R.D.
BMC Bioinformatics Volume 15 (2014) p.7 DOI: 10.1186/1471-2105-15-7

GenomeCons 1.0 – Manipulate Multiple Genome Sequence Alignments and their Consensus Sequences

GenomeCons 1.0

:: DESCRIPTION

GenomeCons is a web server to manipulate multiple genome sequence alignments and their consensus sequences for high-throughput genome sequence analyses.

::DEVELOPER

GenomeCons team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 GenomeCons

:: MORE INFORMATION

Citation

GenomeCons: a web server for manipulating multiple genome sequence alignments and their consensus sequences.
Sato T, Suyama M.
Bioinformatics. 2014 Dec 4. pii: btu803.