Tag: seqMINER

SEQMINER 8.0 – Efficiently Read Sequence Data into R

SEQMINER 8.0

:: DESCRIPTION

SEQMINER is an R package for annotating and querying files of sequence variants (e.g., VCF/BCF files) and summary association statistics (e.g., METAL/RAREMETAL files), and for integrating bioinformatics databases.

::DEVELOPER

SEQMINER team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows/ MacOsX
  • R

:: DOWNLOAD

 SEQMINER

:: MORE INFORMATION

Citation

SEQMINER: An R-Package to Facilitate the Functional Interpretation of Sequence-Based Associations.
Zhan X, Liu DJ.
Genet Epidemiol. 2015 Sep 23. doi: 10.1002/gepi.21918.

seqMINER 1.3.3e – Genome Wide Mapping data Interpretation Platform for NGS(ChIPSeq)

seqMINER 1.3.3e

:: DESCRIPTION

seqMINER is an integrated user friendly platform that allows addressing central questions in the ChIP-seq analysis workflow. The design of seqMINER was made in order to make it as easy as possible for an investigator to reach high level of interpretation on his dataset to answer its biological question at best.

::DEVELOPER

seqMINER Team

:: SCREENSHOTS

seqMINER

:: REQUIREMENTS

  • Linux / Mac OsX / Windows
  • Java

:: DOWNLOAD

 seqMINER

:: MORE INFORMATION

Citation

Nucleic Acids Res. 2011 Mar;39(6):e35. doi: 10.1093/nar/gkq1287. Epub 2010 Dec 21.
seqMINER: an integrated ChIP-seq data interpretation platform.
Ye T, Krebs AR, Choukrallah MA, Keime C, Plewniak F, Davidson I, Tora L.