SEQERR – Estimates Genotype Error Rates for Whole-genome Sequence data

SEQERR

:: DESCRIPTION

The SEQERR program estimates the rate at which homozygous major allele genotypes are mis-called as heterozygote genotypes at low frequency markers. This error rate is estimated using observed allele and genotype frequencies at low frequency variants in identity by descent segments.

::DEVELOPER

Brian L. Browning 

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows / MacOsX
  • Java

:: DOWNLOAD

SEQERR

:: MORE INFORMATION

Citation:

Browning SR, Browning BL.
Accurate Non-parametric Estimation of Recent Effective Population Size from Segments of Identity by Descent.
Am J Hum Genet. 2015 Sep 3;97(3):404-18. doi: 10.1016/j.ajhg.2015.07.012. Epub 2015 Aug 20. PMID: 26299365; PMCID: PMC4564943.

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