Synthaser v1.1.21 – Analysing Domain Architecture of Fungal Secondary Metabolite Megasynth(et)ases

Synthaser v1.1.21

:: DESCRIPTION

Synthaser parses the results of a batch NCBI conserved domain search and determines the domain architecture of secondary metabolite synthases.

::DEVELOPER

Chooi Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux / Mac OsX
  • Python

:: DOWNLOAD

Synthaser

:: MORE INFORMATION

Citation

Gilchrist CLM, Chooi YH.
Synthaser: a CD-Search enabled Python toolkit for analysing domain architecture of fungal secondary metabolite megasynth(et)ases.
Fungal Biol Biotechnol. 2021 Nov 11;8(1):13. doi: 10.1186/s40694-021-00120-9. PMID: 34763725.

antiSMASH 6.0.0 – Antibiotics & Secondary Metabolite Analysis SHell

antiSMASH 6.0.0

:: DESCRIPTION

antiSMASH allows the rapid genome-wide identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genomes

::DEVELOPER

antiSMASH team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/Linux/MacOsX
  • Python
  • C++ Compiler
  • Java

:: DOWNLOAD

 antiSMASH

:: MORE INFORMATION

Citation

Nucleic Acids Res. 2013 Jul;41(Web Server issue):W204-12. doi: 10.1093/nar/gkt449. Epub 2013 Jun 3.
antiSMASH 2.0–a versatile platform for genome mining of secondary metabolite producers.
Blin K1, Medema MH, Kazempour D, Fischbach MA, Breitling R, Takano E, Weber T.

Nucleic Acids Res. 2011 Jul;39(Web Server issue):W339-46. doi: 10.1093/nar/gkr466. Epub 2011 Jun 14.
antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences.
Medema MH1, Blin K, Cimermancic P, de Jager V, Zakrzewski P, Fischbach MA, Weber T, Takano E, Breitling R.