:: DESCRIPTION
GEMINI is an open-source bioinformatics tool and website written in python to facilitate near-neighbor searching of genomic data.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
BMC Bioinformatics. 2016 Feb 24;17:102. doi: 10.1186/s12859-016-0934-8.
GEMINI: a computationally-efficient search engine for large gene expression datasets.
DeFreitas T, Saddiki H, Flaherty P
:: DESCRIPTION
MSblender is a software for integrating peptide identifications from multiple database search engines. MSblender rescores unique peptide-spectrum matches by multivariate mixture modeling of score distributions from multiple search engines.
::DEVELOPER
the Marcotte Lab at University of Texas at Austin
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
T. Kwon, H. Choi, C. Vogel, A.I. Nesvizhskii, and E.M. Marcotte,
MSblender: a probabilistic approach for integrating peptide identifications from multiple database search engines.
J. Proteome Res., 2011, 10 (7), pp 2949–2958
:: DESCRIPTION
Giggle is a genomics search engine for genomic features and intervals. That is, scalable, multi-file index for fast queries of genomic intervals.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Nat Methods. 2018 Feb;15(2):123-126. doi: 10.1038/nmeth.4556. Epub 2018 Jan 8.
GIGGLE: a search engine for large-scale integrated genome analysis.
Layer RM, Pedersen BS, DiSera T, Marth GT, Gertz J, Quinlan AR
:: DESCRIPTION
RNA FRABASE: an engine with database to search the three-dimensional fragments within 3D RNA structures using as an input the sequence(s) and / or secondary structure(s) given in the dot-bracket notation.
::DEVELOPER
The Bioinformatics Group, Poznan University of Technology.
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
BMC Bioinformatics. 2010 May 6;11:231. doi: 10.1186/1471-2105-11-231.
RNA FRABASE 2.0: an advanced web-accessible database with the capacity to search the three-dimensional fragments within RNA structures.
Popenda M, Szachniuk M, Blazewicz M, Wasik S, Burke EK, Blazewicz J, Adamiak RW.
:: DESCRIPTION
MedSavant is a tool that helps find the genetic causes of disease.
::DEVELOPER
the Computational Biology Lab at the University of Toronto’s Department of Computer Science.
:: SCREENSHOTS
N/A
::REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
PyNISTPL is a python module that interfaces to the NIST MS Search Engine libraries to provide easy to use command-line searching and construction of peptide spectrum libraries.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
