ScreenCap3 – Screening of Caspase-3 substrates and Cleavage site prediction

ScreenCap3

:: DESCRIPTION

ScreenCap3 is a web-based prediction method, to facilitate the discovery of novel caspase-3 substrates in human proteome.

::DEVELOPER

Computational Biology Research Center[CBRC]

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Proteomics. 2014 Sep;14(17-18):2042-6. doi: 10.1002/pmic.201400002. Epub 2014 Aug 4.
ScreenCap3: Improving prediction of caspase-3 cleavage sites using experimentally verified noncleavage sites.
Fu SC, Imai K, Sawasaki T, Tomii K.

SSHscreen 2.0.1 – High-throughput screening of SSH cDNA libraries using DNA microarray data

SSHscreen 2.0.1

:: DESCRIPTION

SSHscreen is the R software package for screening forward and reverse cDNA libraries enriched for cowpea drought response genes microarrays,  (i) to normalize the data effectively using spike-in control spot normalization, and (ii) to select clones for sequencing based on the calculation of enrichment ratios with associated statistics.

::DEVELOPER

the Bioinformatics and Computational Biology Unit at the University of Pretoria

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/Linux
  • R package

:: DOWNLOAD

 SSHscreen

:: MORE INFORMATION

Citation

Coetzer N, Gazendam I, Oelofse D, Berger DK (2010)
SSHscreen and SSHdb, generic software for microarray based gene discovery: application to the stress response in cowpea.
Plant Methods 6: 10.

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