scHiCluster v0.1.1 – Single-cell Clustering algorithm for Hi-C Contact Matrices

scHiCluster v0.1.1

:: DESCRIPTION

scHiCluster is a comprehensive python package for single-cell chromosome contact data analysis. It includes the identification of cell types (clusters), loop calling in cell types, and domain and compartment calling in single cells.

::DEVELOPER

Ma Laboratory

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Python

:: DOWNLOAD

scHiCluster

:: MORE INFORMATION

Citation:

Zhou J, Ma J, Chen Y, Cheng C, Bao B, Peng J, Sejnowski TJ, Dixon JR, Ecker JR.
Robust single-cell Hi-C clustering by convolution- and random-walk-based imputation.
Proc Natl Acad Sci U S A. 2019 Jul 9;116(28):14011-14018. doi: 10.1073/pnas.1901423116. Epub 2019 Jun 24. PMID: 31235599; PMCID: PMC6628819.