Tag: SCG

SCG 0.3.1 – Inference of Clonal Genotypes

SCG 0.3.1

:: DESCRIPTION

SCG ( Single Cell Genotyper) is a software for inference of clonal genotypes using targeted single cell (nucleus) sequencing.

::DEVELOPER

Shah Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / MacOsX / Windows
  • Python

:: DOWNLOAD

SCG

:: MORE INFORMATION

Citation

Nat Methods. 2016 Jul;13(7):573-6. doi: 10.1038/nmeth.3867. Epub 2016 May 16.
Clonal genotype and population structure inference from single-cell tumor sequencing.
Roth A, McPherson A, Laks E, Biele J, Yap D, Wan A, Smith MA, Nielsen CB, McAlpine JN, Aparicio S, Bouchard-Côté A, Shah SP

SCG 20110716 – Self Consistency Grouping

SCG 20110716

:: DESCRIPTION

SCG clusters whose members are closer in rank to each other than to any member outside the cluster. SCG does not take any additional parameters and consequently does not impose any restriction on the size or the number of the clusters that it finds, since the natural boundaries of clusters are determined by the inconsistencies in the ranks.

::DEVELOPER

Grishin Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Python

:: DOWNLOAD

 SCG 

:: MORE INFORMATION

Citation:

Bong-Hyun Kim, Bhadrachalam Chitturi and Nick V Grishin.
Self consistency grouping: a stringent clustering method
BMC Bioinformatics 2012, 13(Suppl 13):S3.