:: DESCRIPTION
SCANSTAT considers a number of marker loci in the genome. At each marker, genotypes are available for two types of observations
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Scan statistics to scan markers for susceptibility genes.
Hoh J, Ott J.
Proc Natl Acad Sci U S A. 2000 Aug 15;97(17):9615-7.
:: DESCRIPTION
RASTA-Bacteria is an automated method allowing quick and reliable identification of TA loci in sequenced prokaryotic genomes, whether they are annotated open reading frames or not.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Genome Biol. 2007;8(8):R155.
RASTA-Bacteria: a web-based tool for identifying toxin-antitoxin loci in prokaryotes.
Sevin EW, Barloy-Hubler F.
:: DESCRIPTION
AUTOSCAN automatically creates data files, uses MAKEPED (converts pre-linkage format files to linkage format), DOWNFREQ (estimates allele frequencies from pedigree data), and PEDCHECK (Mendelian checking) programs and finally starts statistical analyses via the ANALYZE package. ANALYZE performs parametric linkage analysis (MLINK), nonparametric affected sib-pair analysis (ASP), family-based association analysis (TDT, HRRR), and homogeneity testing (HOMOG). Input files for AUTOSCAN are the pedigree files for all chromosomes,the disease model file, the number of loci file, and the ANALYZE input file.The AUTOSCAN also allows easy handling of several phenotype traits and trait features by only changing the disease model file after each run.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD AUTOSCAN
:: MORE INFORMATION
N/A
:: DESCRIPTION
selscan is a program to calculate EHH-based scans for positive selection in genomes
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Mol Biol Evol. 2014 Oct;31(10):2824-7. doi: 10.1093/molbev/msu211. Epub 2014 Jul 10.
selscan: an efficient multithreaded program to perform EHH-based scans for positive selection.
Szpiech ZA, Hernandez RD
:: DESCRIPTION
Single Channel Array Normalization (SCAN) is a microarray normalization method to facilitate personalized-medicine workflows.
The Universal Probability of expression Codes (UPC) method is an extension of SCAN that produces “probabilistic barcode” values that estimate the probability a given gene is active in a specific sample.
SCAN and UPC are currently implemented in the SCAN-UPC.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Genomics. 2012 Dec;100(6):337-44. doi: 10.1016/j.ygeno.2012.08.003.
A single-sample microarray normalization method to facilitate personalized-medicine workflows.
Piccolo SR, Sun Y, Campbell JD, Lenburg ME, Bild AH, Johnson WE.
:: DESCRIPTION
NeuroPIpred is an in silico method, which is developed to predict and design insect neuropeptides with better efficacy for controlling pest from infesting various crops.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
NeuroPIpred: a tool to predict, design and scan insect neuropeptides.
Agrawal P, Kumar S, Singh A, Raghava GPS, Singh IK.
Sci Rep. 2019 Mar 26;9(1):5129. doi: 10.1038/s41598-019-41538-x.
:: DESCRIPTION
SeqCNVCBS is for the use of detecting Copy Number Variation (CNV) using sequencing data. Matched-samples of control and case (normal and tumor) are required. The algorithm uses a scan statistics to detect windows of rate differences in two non-homogeneous Poisson Processes.
::DEVELOPER
Jeremy J. Shen , Nancy R. Zhang
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
