SBSI 1.4.5

:: DESCRIPTION

SBSI (Systems Biology Software Infrastructure) is a suite of software applications and libraries with the following aims:

To provide access to parallelized algorithms for computationally challenging tasks such as parameter optimisation.
To enable registered users to run these algorithms on their models and data, using HPC machines.
To provide access for users with varying levels of computational modelling experience.

There are three main software components in SBSI: SBSINumerics, SBSIVisual and SBSIDispatcher.

SBSINumerics contains a configurable, parallelized command line application for running parameter estimations.

SBSIVisual is a desktop application, that provides easier access to SBSINumerics functionality for non-programmers, and can display results, run simulations, and interact with systems biology databases.

SBSIDispatcher is a middleware component, that can deploy and manage SBSINumerics procedures on backend servers.

::DEVELOPER

SBSI Team

:: SCREENSHOTS

:: REQUIREMENTS

Windows / Linux / Mac OsX

:: DOWNLOAD

SBSI

:: MORE INFORMATION

Citation

SBSI: an extensible distributed software infrastructure for parameter estimation in systems biology.
Adams R, Clark A, Yamaguchi A, Hanlon N, Tsorman N, Ali S, Lebedeva G, Goltsov A, Sorokin A, Akman OE, Troein C, Millar AJ, Goryanin I, Gilmore S.
Bioinformatics. 2013 Mar 1;29(5):664-665. Epub 2013 Jan 17.

SBSI CellDesigner Plugin 20111025

:: DESCRIPTION

SBSI CellDesigner Plugin is to bridge the functionalities of CellDesigner and SBSI. This way a user will have the ability to design his models in CellDesigner and then optimize them using SBSI without the need to switch between programs thus raising his productivity.

SBSI CellDesigner Plugin draws a model that is already open in CellDesigner and using a dialog, helps the user to configure the optimization for the particular model. The dialog prevents the user from creating a configuration that is not compatible with the optimization framework. On top of that it provides the user the ability to track any jobs that have been submitted to a remote server and with the ability to plot the results of the optimization.