Tag: SAXS

FoXS – Fast SAXS Profile Computation with Debye Formula

FoXS

:: DESCRIPTION

FoXS is a method for computing a theoretical scattering profile of a structure and fitting of experimental profile. FoXS can be used as a basic tool for numerous structural modeling applications with SAXS (Small Angle X-ray Scattering ) data

::DEVELOPER

Andrej Sali Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 FoXS

:: MORE INFORMATION

Citation

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W540-4. doi: 10.1093/nar/gkq461. Epub 2010 May 27.
FoXS: a web server for rapid computation and fitting of SAXS profiles.
Schneidman-Duhovny D1, Hammel M, Sali A.

pyDockSAXS – Protein-protein Interactions using SAXS and Computational Docking

pyDockSAXS

:: DESCRIPTION

pyDockSAXS server is a web server for rigid-body protein-protein docking that combines computational and experimental information.

::DEVELOPER

pyDockSAXS team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation:

pyDockSAXS: protein-protein complex structure by SAXS and computational docking.
Jiménez-García B, Pons C, Svergun DI, Bernadó P, Fernández-Recio J.
Nucleic Acids Res. 2015 Apr 20. pii: gkv368.

SAXSTER – SAXS-assisted Protein Fold Recognition

SAXSTER

:: DESCRIPTION

SAXSTER is a new algorithm to combine small-angle x-ray scattering (SAXS) data and threading for high-resolution protein structure determination. Given a query sequence, SAXSTER first generates a list of template alignments using the MUSTER threading program from the PDB library. The SAXS data will then be used to prioritize the best template alignments based on the SAXS profile match, which are finally used for full-length atomic protein structure construction

::DEVELOPER

Yang Zhang’s Research Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Borwser
:: DOWNLOAD

 NO 

:: MORE INFORMATION

Citation

Biophys J. 2011 Dec 7;101(11):2770-81. doi: 10.1016/j.bpj.2011.10.046.
Improving protein template recognition by using small-angle x-ray scattering profiles.
dos Reis MA1, Aparicio R, Zhang Y.