SAPS/SSPA 20110801 – Statistical Analysis of Protein Sequences & Significant Segment Pair Alignment

SAPS/SSPA 20110801

:: DESCRIPTION

SAPS (statistical analysis of protein sequences) calculates all the statistics for any individual protein sequence input.

SSPA is an acronym for Significant Segment Pair Alignment.

::DEVELOPER

The Brendel Group @ Indiana University

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

SAPS/SSPA

:: MORE INFORMATION

Citation

SAPS
Brendel, V., Bucher, P., Nourbakhsh, I.R., Blaisdell, B.E. & Karlin, S. (1992)
Methods and algorithms for statistical analysis of protein sequences.
Proc. Natl. Acad. Sci. USA 89, 2002-2006.

SSPA
Karlin, S., Weinstock, G. & Brendel, V. (1995)
Bacterial classifications derived from RecA protein sequence comparisons.
J. Bacteriol. 177, 6881-6893.

SAPS 2.2.0 – Significance Analysis of Prognostic Signatures

SAPS  2.2.0

:: DESCRIPTION

SAPS provides a robust method for identifying biologically significant gene sets associated with patient survival.

::DEVELOPER

Beck Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ WIndows/ MacOsX
  • R
  • BioConductor

:: DOWNLOAD

 SAPS

:: MORE INFORMATION

Citation

PLoS Comput Biol. 2013;9(1):e1002875. doi: 10.1371/journal.pcbi.1002875. Epub 2013 Jan 24.
Significance analysis of prognostic signatures.
Beck AH1, Knoblauch NW, Hefti MM, Kaplan J, Schnitt SJ, Culhane AC, Schroeder MS, Risch T, Quackenbush J, Haibe-Kains B.