Rosetta 3.13 – Simulation and Design of Protein

Rosetta 3.13

:: DESCRIPTION

ROSETTA is a software suite for predicting and designing protein structures, protein folding mechanisms, and protein-protein interactions.

::DEVELOPER

Rosetta Team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux

:: DOWNLOAD

Rosetta

:: MORE INFORMATION

Citation

Leaver-Fay A, Tyka M, Lewis SM, Lange OF, Thompson J, Jacak R, Kaufman K, Renfrew PD, Smith CA, Sheffler W, Davis IW, Cooper S, Treuille A, Mandell DJ, Richter F, Ban YE, Fleishman SJ, Corn JE, Kim DE, Lyskov S, Berrondo M, Mentzer S, Popovi? Z, Havranek JJ, Karanicolas J, Das R, Meiler J, Kortemme T, Gray JJ, Kuhlman B, Baker D, Bradley P (2011)
ROSETTA3: an object-oriented software suite for the simulation and design of macromolecules
Methods Enzymol 487:545-74

PconsFold v1.0 – Pipeline for Protein Folding using PconsC and Rosetta

PconsFold v1.0

:: DESCRIPTION

PconsFold is a pipeline for protein folding using predicted contacts from PconsC and a Rosetta folding protocol.

::DEVELOPER

Elofsson Lab

:: SCREENSHOTS

N/A

::REQUIREMENTS

Linux/ Windows/ MacOsX
Python
PconsC

:: DOWNLOAD

PconsFold

:: MORE INFORMATION

Citation

PconsFold: improved contact predictions improve protein models.
Michel M, Hayat S, Skwark MJ, Sander C, Marks DS, Elofsson A.
Bioinformatics. 2014 Sep 1;30(17):i482-i488. doi: 10.1093/bioinformatics/btu458.

PyRosetta 2.012 – Python-based Interface to Rosetta Molecular Modeling Suite

PyRosetta 2.012

:: DESCRIPTION

PyRosetta is an interactive Python-based interface to the powerful Rosetta molecular modeling suite. It enables a user to create custom molecular modeling algorithms with Rosetta sampling and scoring functions using Python scripting. PyRosetta is designed to make the sophisticated Rosetta molecular modeling suite accessible to a broader audience of scientists in the life sciences.

::DEVELOPER

the Gray Lab

:: SCREENSHOTS

:: REQUIREMENTS

Windows / Linux / Mac OsX
Python

:: DOWNLOAD

PyRosetta

:: MORE INFORMATION

Citation

S. Chaudhury, S. Lyskov & J. J. Gray,
“PyRosetta: a script-based interface for implementing molecular modeling algorithms using Rosetta,”
Bioinformatics, 26(5), 689-691 (2010).