RNAgraphdist 1.0

:: DESCRIPTION

The RNAgraphdist calculates the equilibrium distribution of graph-distances between arbitrary pair of nucleotides in an RNA molecule. The program reads RNA structures generated from RNAsubopt, calculates their equilibrium distribution and outputs the graph-distances in a tab delimited list or in the terminal.

::DEVELOPER

Jing Qin

:: SCREENSHOTS

N/A

:: REQUIREMENTS

• Linux

:: DOWNLOAD

 RNAgraphdist

:: MORE INFORMATION

Citation

Algorithms Mol Biol. 2014 Sep 11;9:19. doi: 10.1186/1748-7188-9-19. eCollection 2014.
Graph-distance distribution of the Boltzmann ensemble of RNA secondary structures.
Qin J, Fricke M, Marz M, Stadler PF, Backofen R.