BASiNET 0.0.4 – Classification of RNA Sequences using Complex Network Theory

BASiNET 0.0.4

:: DESCRIPTION

BASiNET is an alignment-free tool for classifying biological sequences based on the feature extraction from complex network measurements.

::DEVELOPER

Eric Augusto Ito <ericaugustoito at hotmail.com>

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Windows /Linux / MacOs
R

:: DOWNLOAD

BASiNET

:: MORE INFORMATION

Citation:

Ito EA, Katahira I, Vicente FFDR, Pereira LFP, Lopes FM.
BASiNET-BiologicAl Sequences NETwork: a case study on coding and non-coding RNAs identification.
Nucleic Acids Res. 2018 Sep 19;46(16):e96. doi: 10.1093/nar/gky462. PMID: 29873784; PMCID: PMC6144827.

IncaRNAtion – Design of RNA Sequences with Targeted Secondary Structure and Nucleotide Distribution

IncaRNAtion

:: DESCRIPTION

IncaRNAtion is a novel algorithm to design RNA sequences folding into target secondary structures with a predefined nucleotide distribution.

::DEVELOPER

Computer Science and Biology at McGill

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux / Windows/ MacOsX
Python

:: DOWNLOAD

IncaRNAtion

:: MORE INFORMATION

Citation:

Bioinformatics. 2013 Jul 1;29(13):i308-15. doi: 10.1093/bioinformatics/btt217.
A weighted sampling algorithm for the design of RNA sequences with targeted secondary structure and nucleotide distribution.
Reinharz V1, Ponty Y, Waldispühl J.

ReverseComplement 1.8 – Reverse Complement of DNA and RNA sequences

ReverseComplement 1.8

:: DESCRIPTION

ReverseComplement is a handy, easy to use, simple application specially designed to help you determine the reverse, complement, and reverse complement of DNA and RNA sequences.

::DEVELOPER

Dr Kevin Ashelford

:: SCREENSHOTS

:: REQUIREMENTS

Windows / Linux / Mac OsX
Java

:: DOWNLOAD

ReverseComplement

:: MORE INFORMATION