RIblast 1.2.0 – RNA-RNA Interaction prediction

RIblast 1.2.0

:: DESCRIPTION

RIblast is ultrafast RNA-RNA interaction prediction software based on seed-and-extension algorithm for comprehensive lncRNA interactome analysis

::DEVELOPER

Tsukasa Fukunaga

::REQUIREMENTS

  • Linux

:: DOWNLOAD

RIblast

:: MORE INFORMATION

Citation

RIblast: an ultrafast RNA-RNA interaction prediction system based on a seed-and-extension approach.
Fukunaga T, Hamada M.
Bioinformatics. 2017 Sep 1;33(17):2666-2674. doi: 10.1093/bioinformatics/btx287.

LRIscan – Predict Conserved, Genome-wide Long range RNA-RNA Interactions

LRIscan

:: DESCRIPTION

LRIscan is a tool for the LRI prediction in full viral genomes based on a multiple genome alignment.

::DEVELOPER

RNA Bioinformatics and High Throughput Analysis Jena

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ Windows

:: DOWNLOAD

 LRIscan

:: MORE INFORMATION

Citation

Prediction of conserved long-range RNA-RNA interactions in full viral genomes.
Fricke M, Marz M.
Bioinformatics. 2016 Jun 10. pii: btw323.