:: DESCRIPTION
RPISeq is a family of classifiers for predicting RNA-protein interactions using only sequence information.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation:
BMC Bioinformatics. 2011 Dec 22;12:489. doi: 10.1186/1471-2105-12-489.
Predicting RNA-protein interactions using only sequence information.
Muppirala UK1, Honavar VG, Dobbs D.
:: DESCRIPTION
RPI-Pred (RNA-protein interaction predictor) is a RNA-protein interaction prediction server based on Support Vector Machine (SVM).
::DEVELOPER
Center for Bioinformatics & Systems Biology, Wake Forest University
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation
RPI-Pred: predicting ncRNA-protein interaction using sequence and structural information.
Suresh V, Liu L, Adjeroh D, Zhou X.
Nucleic Acids Res. 2015 Feb 18;43(3):1370-9. doi: 10.1093/nar/gkv020.
:: DESCRIPTION
RNAcommender is a tool for genome-wide recommendation of RNA-protein interactions. It is a recommender system capable of suggesting RNA targets to unexplored RNA binding proteins, by propagating the available interaction information, taking into account the protein domain composition and the RNA predicted secondary structure.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
RNAcommender: genome-wide recommendation of RNA-protein interactions.
Corrado G, Tebaldi T, Costa F, Frasconi P, Passerini A.
Bioinformatics. 2016 Aug 8. pii: btw517.