RMfam 0.3 – Multiple Alignments and Probabilistic Models of RNA Motifs

RMfam 0.3

:: DESCRIPTION

RMfam is a database of annotated multiple sequence alignments and probabilistic models for a number of RNA motifs.

::DEVELOPER

Gardner Bioinformatics Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Perl

:: DOWNLOAD

 RMfam

:: MORE INFORMATION

Citation

Annotating RNA motifs in sequences and alignments.
Gardner PP, Eldai H.
Nucleic Acids Res. 2015 Jan;43(2):691-8. doi: 10.1093/nar/gku1327

Locomotif – Visual Design of RNA Motifs

Locomotif

:: DESCRIPTION

Locomotif is a GUI-based program that allows for the visual design of RNA motifs. The graphical structures are then translated into executable programs to be used for searching a motif in a sequence (plain text or FASTA format).

::DEVELOPER

Janina Reeder

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux / Mac / Windows
  • Java

:: DOWNLOAD

Locomotif

:: MORE INFORMATION

Citation

Reeder, Janina, Reeder, Jens and Giegerich, Robert
Locomotif: From Graphical Motif Description to RNA Motif Search
Bioinformatics, 23(13) , Pages:i392-400, 2007