Tag: RNA Binding

RNABindRPlus 1.0 – Prediction of RNA-binding Residues in Protein

RNABindRPlus 1.0

:: DESCRIPTION

RNABindRPlus predicts RNA-binding residues from protein sequences by combining the output from a Support Vector Machine (SVM) classifier with the output from a Homology-based method.

::DEVELOPER

Artificial Intelligence Research Laboratory

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation:

RNABindRPlus: a predictor that combines machine learning and sequence homology-based methods to improve the reliability of predicted RNA-binding residues in proteins.
Walia RR, Xue LC, Wilkins K, El-Manzalawy Y, Dobbs D, Honavar V.
PLoS One. 2014 May 20;9(5):e97725. doi: 10.1371/journal.pone.0097725

RBRDetector – Prediction of Binding Residues on RNA-binding Protein Structures

RBRDetector

:: DESCRIPTION

RBRDetector is a novel structure-based algorithm to identify RNA-binding residues by combining feature- and template-based prediction strategies.

::DEVELOPER

Rong Liu’s Lab of Protein Bioinformatics at Huazhong Agriculture University!

:: SCREENSHOTS

n/a

:: REQUIREMENTS

  • Web Browser
:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation:

Proteins. 2014 Oct;82(10):2455-71. doi: 10.1002/prot.24610. Epub 2014 Jun 9.
RBRDetector: Improved prediction of binding residues on RNA-binding protein structures using complementary feature- and template-based strategies.
Yang XX1, Deng ZL, Liu R.