RMAExpress 1.2.0 – Generate RMA Expression Measures for Affy data

RMAExpress 1.2.0

:: DESCRIPTION

RMAExpress is a standalone GUI program for Windows (and Linux) to compute gene expression summary values for Affymetrix Genechip® data using the Robust Multichip Average expression summary and to carry out quality assessment using probe-level metrics.

::DEVELOPER

Ben Bolstad

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux/ MacOsX / Windows

:: DOWNLOAD

 RMAExpress

:: MORE INFORMATION

tRMA 1.0 – Modification of RMA to Normalize Microarray Experiments

tRMA 1.0

:: DESCRIPTION

tRMA is a modification of RMA to normalize microarray experiments for correlation-based analysis.

::DEVELOPER

Usadel Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/Linux/MacOsX
  • R package

:: DOWNLOAD

  tRMA

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2010 Nov 11;11:553. doi: 10.1186/1471-2105-11-553.
Algorithm-driven artifacts in median Polish summarization of microarray data.
Giorgi FM, Bolger AM, Lohse M, Usadel B.