Tag: Rice Genome

Rice Gene Thresher 2.0 – Mining Genes underlying QTL in Rice Genome

RiceGeneThresher 2.0

:: DESCRIPTION

RiceGeneThresher is a public online resource for mining genes underlying genome regions of interest or quantitative trait loci (QTL) in rice genome. It is a compendium of rice genomic resources consisting of genetic markers, genome annotation, expressed sequence tags (ESTs), protein domains, gene ontology, plant stress-responsive genes, metabolic pathways and prediction of protein-protein interactions.

::DEVELOPER

Rice Gene Discovery Unit, Kasetsart University

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Nucleic Acids Res. 2009 Jan;37(Database issue):D996-1000. doi: 10.1093/nar/gkn638.
RiceGeneThresher: a web-based application for mining genes underlying QTL in rice genome.
Thongjuea S, Ruanjaichon V, Bruskiewich R, Vanavichit A.

i6mA-Pred – Identifying DNA N6-methyladenine Sites in the Rice Genome

i6mA-Pred

:: DESCRIPTION

i6mA-Pred web server was developed to identify DNA N6-methyladenine (6mA) sites in the rice gemome. The results of jackknife test based on the benchmark dataset indicates that the current predictor may become a useful high-throughput tool in identifying 6mA sites.

::DEVELOPER

LinDing Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

i6mA-Pred: identifying DNA N6-methyladenine sites in the rice genome.
Chen W, Lv H, Nie F, Lin H.
Bioinformatics. 2019 Aug 15;35(16):2796-2800. doi: 10.1093/bioinformatics/btz015.