SINA v1.2.11 – High-throughput Multiple Sequence Alignment of ribosomal RNA genes

SINA v1.2.11

:: DESCRIPTION

SINA (SILVA Incremental Aligner) will align and optionally taxonomically classify your rRNA gene sequences.

::DEVELOPER

The SILVA ribosomal RNA database project

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes.
Pruesse E, Peplies J, Glöckner FO.
Bioinformatics. 2012 Jul 15;28(14):1823-9. doi: 10.1093/bioinformatics/bts252.

Barrnap 0.9 – Bacterial ribosomal RNA predictor

Barrnap 0.9

:: DESCRIPTION

Barrnap predicts the location of 5S, 16S and 23S ribosomal RNA genes in Bacterial genome sequences. It takes FASTA DNA sequence as input, and write GFF3 as output. It uses the new NHMMER tool that comes with HMMER 3.1-dev for HMM searching in DNA:DNA style

::DEVELOPER

Torsten Seemann

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Perl
  • NHMMER

:: DOWNLOAD

 Barrnap

:: MORE INFORMATION

rPredictor – Prediction of Ribosomal RNA Secondary Structure

rPredictor

:: DESCRIPTION

rPredictor is a bioinformatic infrastructure for prediction, analysis and storage of secondary structures of ribosomal RNAs.

::DEVELOPER

SIRET Research Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation:

Josef Pánek, Jan Hajič jr., David Hoksza (2014)
Template-Based Prediction of Ribosomal RNA Secondary Structure,
IEEE International Conference on Bioinformatics and Biomedicine (BIBM), Belfast, UK, pp.: 18-20, IEEE

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