Tag: Retention Time

AutoRT v1.0 – Peptide Retention Time Prediction using Deep Learning

AutoRT v1.0

:: DESCRIPTION

AutoRT is a peptide sequence-based RT prediction tool developed using automated deep learning and transfer learning. It can provide high accurate RT prediction with models trained using a small number of peptides (~1000) with transfer learning.

::DEVELOPER

the Zhang Lab

:: SCREENSHOTS

n/a

:: REQUIREMENTS

  • Linux
  • Python

:: DOWNLOAD

AutoRT

:: MORE INFORMATION

Citation

Wen B, Li K, Zhang Y, Zhang B.
Cancer neoantigen prioritization through sensitive and reliable proteogenomics analysis.
Nat Commun. 2020 Apr 9;11(1):1759. doi: 10.1038/s41467-020-15456-w. PMID: 32273506; PMCID: PMC7145864.

TheorChromo 1.0 – Peptide and Protein Retention Time Prediction in Liquid Chromatography

TheorChromo 1.0

:: DESCRIPTION

TheorChromo is an online tool for peptide and protein retention time prediction in liquid chromatography. It implements the BioLCCC model for the most popular case of linear gradient chromatography.

::DEVELOPER

Laboratory of Physical and Chemical Methods for Structure Analysis @ the Institute for Energy Problems of Chemical Physics, Russian Academy of Sciences

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux / MacOSX
  • Python / C++ Compiler

:: DOWNLOAD

  BioLCCC / libBioLCCC

:: MORE INFORMATION

Citation

Anal Chem. 2006 Nov 15;78(22):7770-7.
Liquid chromatography at critical conditions: comprehensive approach to sequence-dependent retention time prediction.
Gorshkov AV, Tarasova IA, Evreinov VV, Savitski MM, Nielsen ML, Zubarev RA, Gorshkov MV.