RFcon – Predict Protein Residue-residue Contacts using Random Forests and Deep networks

RFcon

:: DESCRIPTION

RFcon is a software for sequence-based prediction of protein residue-residue contacts

::DEVELOPER

Z. WANG LAB

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Luttrell J 4th, Liu T, Zhang C, Wang Z.
Predicting protein residue-residue contacts using random forests and deep networks.
BMC Bioinformatics. 2019 Mar 14;20(Suppl 2):100. doi: 10.1186/s12859-019-2627-6. PMID: 30871477; PMCID: PMC6419322.

FragHMMent 1.24 – Residue-residue Contact Prediction

FragHMMent 1.24

:: DESCRIPTION

FragHMMent uses multi-data hidden Markov models trained on local neighborhoods of protein structure to predict residue-residue contacts

::DEVELOPER

IFM Bioinformatics

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows/ MacOsX
  • Java

:: DOWNLOAD

  FragHMMent

:: MORE INFORMATION

Citation

Bioinformatics. 2009 May 15;25(10):1264-70. doi: 10.1093/bioinformatics/btp149. Epub 2009 Mar 16.
Using multi-data hidden Markov models trained on local neighborhoods of protein structure to predict residue-residue contacts.
Björkholm P, Daniluk P, Kryshtafovych A, Fidelis K, Andersson R, Hvidsten TR.