SomaticSniper 1.0.5 – Somatic SNV Detection for Whole Genome Resequencing Data.

SomaticSniper 1.0.5

:: DESCRIPTION

SomaticSniper is a software for comparing tumor and normal pairs. The developer estimate its sensitivity and precision, and present several common sources of error resulting in miscalls.

::DEVELOPER

The Genome Institute at Washington University

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/MacOsX

:: DOWNLOAD

 SomaticSniper

:: MORE INFORMATION

Citation:

Bioinformatics. 2012 Feb 1;28(3):311-7.
SomaticSniper: Identification of Somatic Point Mutations in Whole Genome Sequencing Data.
Larson DE, Harris CC, Chen K, Koboldt DC, Abbott TE, Dooling DJ, Ley TJ, Mardis ER, Wilson RK, Ding L.

seqEM 1.0 – Genotype Calling Algorithm for Resequencing Data

seqEM 1.0

:: DESCRIPTION

SeqEM is a genotype calling algorithm for next-generation sequence data.SeqEM offers an improved, robust and flexible genotype-calling approach that can be widely applied in the next-generation sequencing studies.

:DEVELOPER

Hussman Institute for Human Genomics, University of Miami

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

 seqEM

:: MORE INFORMATION

Citation

E. R. Martin, D. D. Kinnamon, M. A. Schmidt, E. H. Powell, S. Zuchner and R. W. Morris
SeqEM: an adaptive genotype-calling approach for next-generation sequencing studies
Bioinformatics (2010) 26 (22): 2803-2810

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