PClouds 1.0 – Identify Repeat Structure in large Eukaryotic Genomes

PClouds 1.0

:: DESCRIPTION

The (PClouds) P-clouds package is designed to identify repeat structure in large eukaryotic genomes using oligonucleotide counts.

::DEVELOPER

Pollock Laboratory

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux / MacOsX
C++ Compiler

:: DOWNLOAD

:: MORE INFORMATION

Citation

W. Gu, T. A. Castoe, D. J. Hedges, M. A. Batzer, and D. D. Pollock,
“Identification of repeat structure in large genomes using repeat probability clouds .”
Anal Biochem. 2008 Sep 1;380(1):77-83. Epub 2008 May 20.

Reputer – Compute and Visualize Repeat Structures

Reputer

:: DESCRIPTION

The REPuter program family provides state of the art software solutions to compute and visualize repeats in whole genomes or chromosomes.

::DEVELOPER

Prof. Dr. Stefan Kurtz

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Mac OsX/ Linux

:: DOWNLOAD

:: MORE INFORMATION

Citation

S. Kurtz, J. V. Choudhuri, E. Ohlebusch, C. Schleiermacher, J. Stoye, R. Giegerich:
REPuter: The Manifold Applications of Repeat Analysis on a Genomic Scale.
Nucleic Acids Res., 29(22):4633-4642, 2001.