Tag: RefSeq

RefSeq 207 – NCBI Reference Sequence Database

RefSeq 207

:: DESCRIPTION

RefSeq (the Reference Sequence) collection aims to provide a comprehensive, integrated, non-redundant, well-annotated set of sequences, including genomic DNA, transcripts, and proteins. RefSeq is a foundation for medical, functional, and diversity studies; they provide a stable reference for genome annotation, gene identification and characterization, mutation and polymorphism analysis (especially RefSeqGene records), expression studies, and comparative analyses.

::DEVELOPER

NCBI

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux / Windows / Mac OsX

:: DOWNLOAD

RefSeq

:: MORE INFORMATION

Citation

NCBI Reference Sequences: current status, policy, and new initiatives.
Pruitt KD, Tatusova T, Klimke W, Maglott DR
Nucleic Acids Res 2009 Jan;37(Database issue):D32-6

ProMatch – Match Peptide and mRNA Sequences to Entries in NCBI RefSeq

ProMatch

:: DESCRIPTION

ProMatch is a Java-based standalone program to match input parameters such as peptide and mRNA sequences to entries in NCBI Reference Sequence Database (RefSeq). ProMatch helps identify and eliminate ambiguous identifications from proteomic and transcriptomic data.

::DEVELOPER

Epithelial Systems Biology Laboratory

:: SCREENSHOTS

ProMatch

:: REQUIREMENTS

  • Windows/ Linux/ MacOsX
  • JRE

:: DOWNLOAD

ProMatch

:: MORE INFORMATION

Citation

Physiol Genomics. 2010 Feb 4;40(3):167-83. doi: 10.1152/physiolgenomics.00148.2009. Epub 2009 Dec 8.
Proteomic profiling of nuclei from native renal inner medullary collecting duct cells using LC-MS/MS.
Tchapyjnikov D1, Li Y, Pisitkun T, Hoffert JD, Yu MJ, Knepper MA.