ClonalOrigin 1.0 – Recombination Detection in Bacteria

ClonalOrigin 1.0

:: DESCRIPTION

ClonalOrigin is a tool for recombination detection in bacteria. ClonalOrigin performs a comparative analysis of the sequences of a sample of bacterial genomes in order to reconstruct the recombination events that have taken place in their ancestry.

::DEVELOPER

Daniel Lawson ,

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

 ClonalOrigin

:: MORE INFORMATION

Citation

Genetics. 2013 Oct 30. doi: 10.1534/genetics.113.157172
Inference of the Properties of the Recombination Process from Whole Bacterial Genomes.
Ansari MA, Didelot X.

Didelot X, Lawson D, Darling A, Falush D (2010)
Inference of homologous recombination in bacteria using whole genome sequences.
Genetics doi:10.1534/genetics.110.120121

VisRD 3.0 – Visual Recombination Detection Software package

VisRD 3.0

:: DESCRIPTION

VisRD is a software package allowing graphical inspection of the phylogenetic content of a sequence alignment, that is primarily intended for detection of recombination and recombination breakpoints.

::DEVELOPER

The UEA Computational Biology Laboratory at the University of East Anglia (UEA)

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ Windows/MacOsX
  • Java

:: DOWNLOAD

  VisRD

:: MORE INFORMATION

Citation

P. Lemey, M. Lott, D. P. Martin and V. Moulton,
Identifying recombinants in human and primate immunodeficiency virus sequence alignments using quartet scanning,
BMC bioinformatics (2009), 126-144