Tag: Recombination Analysis

PoSeiDon – Positive Selection Detection and Recombination Analysis

PoSeiDon

:: DESCRIPTION

PoSeiDon is a pipeline to detect significant positively selected sites and possible recombination events in analignment of multiple coding sequences. Sites that undergo positive selection can give you insights in the evolutionary history of your sequences, for example showing you important mutation hot spots, accumulated as results of virus-host arms races during evolution.

::DEVELOPER

RNA Bioinformatics and High Throughput Analysis Jena

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Perl

:: DOWNLOAD

 PoSeiDon

:: MORE INFORMATION

RAT 1.0 – Recombination Analysis Tool for High Throughput Analysis of Genomic Sequence

RAT 1.0

:: DESCRIPTION

RAT (Recombination Analysis Tool)is an uncomplicated and intuitive cross-platform Java-based application intended for high-throughput, distance-based analysis of both DNA and protein multiple sequence alignments, in any one of seven different file formats. All of RAT’s operations are carried out through GUI’s, and all output can be saved as data files (.txt, .xls, .csv), or .jpg files in the case of graphical outputs. RAT is intuitive and easy to use, and only requires a minimum of input from the user. All the parameters have default values, all of which may be changed by the user.

::DEVELOPER

 DICKS COMPUTATIONAL BIOLOGY GROUP

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows/ Linux / Mac OsX
  • JAVA

:: DOWNLOAD

  RAT 

:: MORE INFORMATION

Citation:

Etherington GJ, Dicks J and Roberts IN (2005)
Recombination Analysis Tool (RAT): a program for the high-throughput detection of recombination.
Bioinformatics 21(3):278-281.

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