ReadSim 1.6
:: DESCRIPTION
ReadSim is a fast and simple reads simulator to target long reads such as PacBio or Nanopore.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux
- Python
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
CuReSim is a customized tool which generates synthetic New-Generation Sequencing reads, supporting read simulation for major letter-base sequencing platforms.
CuReSimEval is a tool to evaluate the mapping quality of the CuReSim simulated reads.
::DEVELOPER
:: SCREENSHOTS
N/A
::REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
BMC Genomics. 2014 Apr 5;15:264. doi: 10.1186/1471-2164-15-264.
Comparison of mapping algorithms used in high-throughput sequencing: application to Ion Torrent data.
Caboche S1, Audebert C, Lemoine Y, Hot D.
:: DESCRIPTION
ART is a set of simulation tools to generate synthetic next-generation sequencing reads. ART simulates sequencing reads by mimicking real sequencing process with empirical error models or quality profiles summarized from large recalibrated sequencing data.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Weichun Huang, Leping Li, Jason R Myers, and Gabor T Marth.
ART: a next-generation sequencing read simulator
Bioinformatics (2011) doi:10.1093/bioinformatics/btr708
:: DESCRIPTION
Mason is a read simulator software for Illumina, 454 and Sanger reads. Its features include position specific error rates and base quality values. For Illumina reads, we give a comprehensive analysis with empirical data for the error and quality model. For the other technologies, we use models from the literature. It has been written with performance in mind and can sample reads from large genomes.
::DEVELOPER
Manuel Holtgrewe
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Holtgrewe, M. (2010).
Mason – a read simulator for second generation sequencing data.
Technical Report TR-B-10-06, Institut für Mathematik und Informatik, Freie Universität Berlin.