:: DESCRIPTION
BPSpot is a tool to identify RBP binding spots in RNA.
::DEVELOPER
SCBB-LAB (Studio of Computational Biology and Bioinformatics)
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Sharma NK, Gupta S, Kumar A, Kumar P, Pradhan UK, Shankar R.
RBPSpot: Learning on appropriate contextual information for RBP binding sites discovery.
iScience. 2021 Oct 30;24(12):103381. doi: 10.1016/j.isci.2021.103381. PMID: 34841226; PMCID: PMC8605353.
:: DESCRIPTION
RNAProt is a computational RBP binding site prediction framework based on recurrent neural networks (RNNs). Conceived as an end-to-end method, RNAProt includes all necessary functionalities, from dataset generation over model training to the evaluation of binding preferences and binding site prediction.
::DEVELOPER
Bioinformatics Group Albert-Ludwigs-University Freiburg
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Uhl M, Tran VD, Heyl F, Backofen R.
RNAProt: an efficient and feature-rich RNA binding protein binding site predictor.
Gigascience. 2021 Aug 18;10(8):giab054. doi: 10.1093/gigascience/giab054. PMID: 34406415; PMCID: PMC8372218.
:: DESCRIPTION
mCrossBase is a database of RNA-binding protein (RBP) binding motifs and crosslink sites defined jointly from CLIP data using a novel algorithm mCross
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Feng et al. (2019),
Modeling the in vivo specificity of RNA-binding proteins by precisely registering protein-RNA crosslink sites.
Mol Cell. 74:1189-1204.E6.
