RAP – Rank Aggregation-based data Fusion for Gene Prioritization

RAP

:: DESCRIPTION

RAP is a rank aggregation-based data fusion approach for gene prioritization in plants. It can be used to perform the gene prioritization in Arabidopsis thaliana and 28 non-plant species.

::DEVELOPER

Ma Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • R

:: DOWNLOAD

RAP

:: MORE INFORMATION

Citation

Zhai J, Tang Y, Yuan H, Wang L, Shang H, Ma C.
A Meta-Analysis Based Method for Prioritizing Candidate Genes Involved in a Pre-specific Function.
Front Plant Sci. 2016 Dec 15;7:1914. doi: 10.3389/fpls.2016.01914. PMID: 28018423; PMCID: PMC5156684.

dRHP-PseRA – Detecting Remote Homology Proteins using Profile-based Pseudo Protein Sequence and Rank Aggregation

dRHP-PseRA

:: DESCRIPTION

dRHP-PseRA is a new predictor which was developed by combining four state-of-the-art predictors (PSI-BLAST, HHblits, Hmmer, and Coma) via the rank aggregation approach, based on the concept of pseudo proteins.

::DEVELOPER

Liu Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

NO

:: MORE INFORMATION

Citation

Chen J, Long R, Wang XL, Liu B, Chou KC.
dRHP-PseRA: detecting remote homology proteins using profile-based pseudo protein sequence and rank aggregation.
Sci Rep. 2016 Sep 1;6:32333. doi: 10.1038/srep32333. PMID: 27581095; PMCID: PMC5007510.

TopKCEMC 1.1 / TopKSpace 1.0 – Rank Aggregation Tool

TopKCEMC 1.1 / TopKSpace 1.0

:: DESCRIPTION

TopKCEMC is a rank aggregation tool for integrating data from multiple sources based on ranks.

TopKSpace: based on Borda’s and Markov chain methods that take spaces from the which the individual ranked lists are derived into consideration

::DEVELOPER

Statistical Genetics and Bioinformatics Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • R package

:: DOWNLOAD

 TopKCEMC , TopKSpace

:: MORE INFORMATION

Citation

Lin, S., Ding, J. (2009)
Integration of Ranked Lists via Cross Entropy Monte Carlo with Applications to mRNA and microRNA Studies.
Biometrics, 65, 9-18

Lin, S. (2010)
Space oriented rank-based data integration.
Statistical Applications in Genetics and Molecular Biolog, 20, Article 20.

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