QUBIC2 / QUBIC-R 1.20.1 – Biclustering Tool for Microarray Data

QUBIC2 / QUBIC-R 1.20.1

:: DESCRIPTION

QUBIC ( QUalitative BIClustering algorithm) provides a biclustering module for microarray data. For a set of genes and a set of conditions, the program outputs a block-like structure which shows uniform pattern within the block, the block would contain only subsets of all given genes under subsets of all given conditions.

QUBIC2 is a novel biclustering algorithm for analyses of gene expression data from bulk and single-cell RNA-Sequencing.

::DEVELOPER

Qin Ma  , Bioinformatic and Mathematical Biosciences Lab, The Ohio State University

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • C++ Compiler

:: DOWNLOAD

QUBIC2 / QUBIC-R

:: MORE INFORMATION

Citation

Zhang Y, Xie J, Yang J, Fennell A, Zhang C, Ma Q.
QUBIC: a bioconductor package for qualitative biclustering analysis of gene co-expression data.
Bioinformatics. 2017 Feb 1;33(3):450-452. doi: 10.1093/bioinformatics/btw635. PMID: 28172469.

Guojun Li, Qin Ma, Haibao Tang, Andrew H. Paterson, Ying Xu,
QUBIC: A Qualitative Biclustering Algorithm for Analyses of Gene Expression Data,
Nucleic Acids Research, 2009, 37(15): e101-