EPIGPUHSIC 1.0
:: DESCRIPTION
EPIGPUHSIC is an approach to epistasis detection by exhaustive testing of all possible SNP pairs. The search strategy based on the Hilbert-Schmidt Independence Criterion can help delineate various forms of statistical dependence between the genetic markers and the phenotype.
::DEVELOPER
Bertram Mueller-Myhsok (bmm@mpipsykl.mpg.de) & Tony Kam-Thong [tony@mpipsykl.mpg.de], Machine Learning and Computational Biology Research Group
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux
- R package
- gputools R package
- CUDA developer driver and Toolkit
- GENABLE
:: DOWNLOAD
:: MORE INFORMATION
Citation
Bioinformatics. 2011 Jul 1;27(13):i214-21. doi: 10.1093/bioinformatics/btr218.
Epistasis detection on quantitative phenotypes by exhaustive enumeration using GPUs.
Kam-Thong T, Pütz B, Karbalai N, Müller-Myhsok B, Borgwardt K.