QUALITY 1.1.6 – Variant of the minimum Chi-squared method for limiting Dilution Assays

QUALITY 1.1.6

:: DESCRIPTION

The program QUALITY is a variant of the minimum Chi-squared (MC) method for limiting dilution assays, and for which he has demonstrated by simulation desirable properties of minimum variance (i.e., high precision) and minimum bias. Our method modifies the MC method to allow the user to specify the probabilities of a false negative and false positive PCR.

::DEVELOPER

Mullins Molecular Retrovirology Lab, University of Washington.

:: SCREENSHOTS

:: REQUIREMENTS

Windows/Linux/MacOsX
Java

:: DOWNLOAD

QUALITY

:: MORE INFORMATION

Citation

AIDS Res Hum Retroviruses. 1997 Jun 10;13(9):737-42.
Quantitation of target molecules from polymerase chain reaction-based limiting dilution assays.
Rodrigo AG1, Goracke PC, Rowhanian K, Mullins JI.

SQPR 8.01 – Sequence Quality Plate Reader

SQPR 8.01

:: DESCRIPTION

SQPR is a graphical interface software to allow the researcher to view and assess the quality of sequencing results using a series of program scripts developed to process data generated by automated sequencers.

::DEVELOPER

Gerard R. Lazo

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux/Windows/MacOsX
Perl
CGI

:: DOWNLOAD

SQPR

:: MORE INFORMATION

Citation

Lazo, G.R., Tong, J., Miller, R., Hsia, C., Rausch, C., Kang, Y., and Anderson, O.D. 2001.
Software scripts for quality checking of high-throughput nucleic acid sequencers.
BioTechniques 30(6):1300-1305.

ResProx – Comparing the overall Quality of NMR Protein Structures

ResProx

:: DESCRIPTION

ResProx (Resolution-by-proxy or Res(p)) is a web server that predicts the atomic resolution of NMR protein structures using only PDB coordinate data as input.

::DEVELOPER

Wishart Research Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux
VMware

:: DOWNLOAD

ResProx

:: MORE INFORMATION

Citation

Resolution-by-proxy: a simple measure for assessing and comparing the overall quality of NMR protein structures.
Berjanskii M, Zhou J, Liang Y, Lin G, Wishart DS.
J Biomol NMR. 2012 Jul;53(3):167-80. doi: 10.1007/s10858-012-9637-2