RNApyro
:: DESCRIPTION
RNApyro is an efficient, linear time and space inside-outside algorithm that computes exact mutational probabilities under secondary structure and evolutionary constraints given as a multiple sequence alignment with a consensus structure.
::DEVELOPER
Computer Science and Biology at McGill
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux / Windows/ MacOsX
- Python
:: DOWNLOAD
:: MORE INFORMATION
Citation:
J Comput Biol. 2013 Nov;20(11):905-19. doi: 10.1089/cmb.2013.0085. Epub 2013 Oct 17.
Using structural and evolutionary information to detect and correct pyrosequencing errors in noncoding RNAs.
Reinharz V1, Ponty Y, Waldispühl J.