Tag: Pyrosequenced Amplicon

Acacia 1.53 – Error-corrector for Pyrosequenced Amplicon Reads

Acacia 1.53

:: DESCRIPTION

The Acacia program was implemented to correct errors in pyrosequenced amplicons quickly and with high specificity.

::DEVELOPER

CSIRO Transformational Bioinformatics

:: SCREENSHOTS

Acacia

:: REQUIREMENTS

  • Linux / Windows / MacOSX
  • Java

:: DOWNLOAD

 Acacia

:: MORE INFORMATION

Citation

Fast, accurate error-correction of amplicon pyrosequences using Acacia.
Bragg L, Stone G, Imelfort M, Hugenholtz P, Tyson GW.
Nat Methods. 2012 Apr 27;9(5):425-6. doi: 10.1038/nmeth.1990.

AmpliconNoise 1.29 – Noise Removal from Pyrosequenced Amplicons

AmpliconNoise 1.29

:: DESCRIPTION

AmpliconNoise is a collection of programs for the removal of noise from 454 sequenced PCR amplicons. It involves two steps the removal of noise from the sequencing itself and the removal of PCR point errors. This project also includes the Perseus algorithm for chimera removal.

::DEVELOPER

Christopher Quince

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

  AmpliconNoise

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2011 Jan 28;12:38.
Removing noise from pyrosequenced amplicons.
Quince C, Lanzen A, Davenport RJ, Turnbaugh PJ.