:: DESCRIPTION
PyDeT is a plug-in for PyMOL capable of visualizing Delaunay tessalations of atom sets.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Bioinformation. 2008 May 27;2(8):346-7.
PyDeT, a PyMOL plug-in for visualizing geometric concepts around proteins.
Ordog R
:: DESCRIPTION
Autodock/Vina plugin for PyMOL can be used to set up docking and virtual screening with AutoDock Vina and to view the results.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Daniel Seeliger and Bert L. de Groot.
Ligand docking and binding site analysis with PyMOL and Autodock/Vina.
J. Comput.-Aided Mol. Des. 24:417-422 (2010)
:: DESCRIPTION
PyMOL is a powerful and comprehensive molecular visualization product for rendering and animating 3D molecular structures.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
The PyMOL Molecular Graphics System, Schrödinger, LLC.
PLoS One. 2011;6(8):e21931. doi: 10.1371/journal.pone.0021931. Epub 2011 Aug 16.
Real-time PyMOL visualization for Rosetta and PyRosetta.
Baugh EH, Lyskov S, Weitzner BD, Gray JJ.
:: DESCRIPTION
A simple and intuitive interface, PyMod, between the popular molecular graphics system PyMOL and several other tools (i.e., BLAST, ClustalW, Muscle, CEalign and MODELLER) has been developed, to show how the integration of the individual steps required for homology modelling and sequence/structure analysis within the PyMOL framework can hugely simplify these tasks.PyMod represents a new tool for the analysis and the manipulation of protein sequences and structures.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
BMC Bioinformatics. 2012 Mar 28;13 Suppl 4:S2. doi: 10.1186/1471-2105-13-S4-S2.
PyMod: sequence similarity searches, multiple sequence-structure alignments, and homology modeling within PyMOL.
:: DESCRIPTION
nuccyl is a Perl program that allows PyMOL, a powerful open-source molecular modeling system, to display atomic models of nucleic acids in a highly simplified representation.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
