GenomeFastScreen 1.13.0 – Compi pipeline for Fast Screening of PSS

GenomeFastScreen 1.13.0

:: DESCRIPTION

GenomeFastScreen is a Compi pipeline that automates the process of identifying genes that likely show PSS(Positively Selected Sites), and thus, should be studied in detail, starting from a set of FASTA files, one per genome, containing all coding sequences.

::DEVELOPER

SING Group.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

GenomeFastScreen 

:: MORE INFORMATION

PSS 20091105 – Protein Profile Similarity Screening

PSS 20091105

:: DESCRIPTION

PSS is a matlab code of computational protein profile similarity screening for quantitative mass spectrometry experiments.

::DEVELOPER

Hamprecht lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows/ MacOsX
  • MatLab

:: DOWNLOAD

 PSS

:: MORE INFORMATION

Citation

Bioinformatics. 2010 Jan 1;26(1):77-83. doi: 10.1093/bioinformatics/btp607. Epub 2009 Oct 27.
Computational protein profile similarity screening for quantitative mass spectrometry experiments.
Kirchner M1, Renard BY, Köthe U, Pappin DJ, Hamprecht FA, Steen H, Steen JA.

PSS 1.2 / PSSweb – Protein Structural Statistics

PSS 1.2 / PSSweb

:: DESCRIPTION

PSS is a protein structural statistics program for Unix-like environments.

PSSweb is a web server for protein structural statistics.

::DEVELOPER

Thomas Gaillard

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Perl

:: DOWNLOAD

 PSS

:: MORE INFORMATION

Citation

J Chem Inf Model. 2013 Sep 23;53(9):2471-82. doi: 10.1021/ci400233j. Epub 2013 Sep 9.
Protein structural statistics with PSS.
Gaillard T1, Schwarz BB, Chebaro Y, Stote RH, Dejaegere A.

PSSweb: protein structural statistics web server.
Gaillard T, Stote RH, Dejaegere A.
Nucleic Acids Res. 2016 May 12. pii: gkw332.
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