iPiG r5 – Integrating PSMs into Genome Browser Visualisations

iPiG r5

:: DESCRIPTION

iPiG targets the integration of peptide spectrum matches (PSMs) from mass spectrometry (MS) peptide identifications into genomic visualisations provided by genome browser such as the UCSC genome browser

::DEVELOPER

iPiG team

: SCREENSHOTS

iPiG

:: REQUIREMENTS

  • Linux/ Windows/ MacOsX
  • java

:: DOWNLOAD

  iPiG

:: MORE INFORMATION

Citation

iPiG: Integrating Peptide Spectrum Matches Into Genome Browser Visualizations
Mathias Kuhring and Bernhard Y. Renard
PLoS ONE 7(12): e50246. doi:10.1371/journal.pone.0050246

DeepRescore – Rescore PSMs leveraging Deep Learning-derived Peptide Features

DeepRescore

:: DESCRIPTION

DeepRescore is an immunopeptidomics data analysis tool that leverages deep learning-derived peptide features to rescore peptide-spectrum matches (PSMs).

::DEVELOPER

the Zhang Lab

:: SCREENSHOTS

n/a

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

DeepRescore

:: MORE INFORMATION

Citation

Li K, Jain A, Malovannaya A, Wen B, Zhang B.
DeepRescore: Leveraging Deep Learning to Improve Peptide Identification in Immunopeptidomics.
Proteomics. 2020 Nov;20(21-22):e1900334. doi: 10.1002/pmic.201900334. Epub 2020 Sep 27. PMID: 32864883; PMCID: PMC7718998.