Ar_NHPred – Prediction of Aromatic Backbone NH Interaction in Proteins

Ar_NHPred

:: DESCRIPTION

Ar_NHPred is a web server for predicting the aromatic backbone NH interaction in a given amino acid sequence where the pi ring of aromatic residues interact with the backbone NH groups. The method is based on the neural network training on PSI-BLAST generated position specific matrices and PSIPRED predicted secondary structure

::DEVELOPER

Dr. G P S Raghava

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

  NO

:: MORE INFORMATION

Citation

Kaur, H. and Raghava, G. P. S. (2004)
Role of evolutionary information in prediction of aromatic-backbone NH interactions in proteins.
FEBS Letters 564:47-57.

GSTPred – Prediction of Glutathione S-transferase Proteins

GSTPred

:: DESCRIPTION

GSTpred is a web-server specially trained for the Glutathione S-transferase protein.The prediction is based on the basis of amino acid composition, dipeptide composition, tripeptide composition by using support vector machines(SVM).

::DEVELOPER

GSTPred team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/Linux/MacOsX
  • Perl

:: DOWNLOAD

 GSTPred

:: MORE INFORMATION

Citation

Protein Pept Lett. 2007;14(6):575-80.
Support vector machine based prediction of glutathione S-transferase proteins.
Mishra NK1, Kumar M, Raghava GP.

SSPred – Identification & Classification of Proteins involved in Bacterial Secretion Systems

SSPred

:: DESCRIPTION

SSPred is a prediction server for the identification & classification of proteins involved in bacterial secretion systems

::DEVELOPER

Sachin Pundhir

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Server

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Pundhir, S., and Kumar, A. (2011)
SSPred: a prediction server based on SVM for the identification and classification of proteins involved in bacterial secretion systems.
Bioinformation 6(10): 380-382

iHOP – Information Hyperlinked over Proteins

iHOP

:: DESCRIPTION

 iHOP provides fast, accurate, comprehensive, and up-to-date summary information on more than 80,000 biological molecules by automatically extracting key sentences from millions of PubMed documents.

::DEVELOPER

Robert Hoffmann

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 No

:: MORE INFORMATION

Citation

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W21-6. Epub 2007 May 7.
iHOP web services.
Fernández JM, Hoffmann R, Valencia A.