Tag: Protein Surfaces

EPCES – Prediction of Antigenic Epitopes on Protein Surfaces by Consensus Scoring

EPCES

:: DESCRIPTION

EPCES (Epitopes ConsEnsus Scoring) is a new antigen Epitope Prediction method from six different scoring functions – residue epitope propensity, conservation score, side-chain energy score, contact number, surface planarity score, and secondary structure composition.

::DEVELOPER

System Biology Laboratory Of Chi Zhang

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

 :: MORE INFORMATION

Citation

BMC Bioinformatics. 2009 Sep 22;10:302. doi: 10.1186/1471-2105-10-302.
Prediction of antigenic epitopes on protein surfaces by consensus scoring.
Liang S1, Zheng D, Zhang C, Zacharias M.

PepSite 2 – Prediction of Peptide Binding Sites on Protein Surfaces

PepSite 2

:: DESCRIPTION

PepSite can predict binding of a given peptide onto a protein structure, enabling users to better understand the details of the interaction of interest.

::DEVELOPER

Russell Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

PepSite: prediction of peptide-binding sites from protein surfaces.
Trabuco LG, Lise S, Petsalaki E, and Russell RB.
Nucleic Acids Res. 2012; 40(Web Server issue):W423-426.