Tag: Protein Expression

IMMP – Integration of MicroRNA, mRNA, and Protein Expression Data for the Identification of Cancer-Related MicroRNA

IMMP

:: DESCRIPTION

IMMP explores two approaches for the investigation of gene-miRNA relationships by integrating mRNA expression and protein expression data. It presents ranked miRNAs lists according to their effects on cancer development and constructed modules containing mRNAs, proteins, and miRNAs, in which these three molecular types are highly correlated.

::DEVELOPER

Data Mining & Computational Biology Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/Linux/MacOsX
  • R

:: DOWNLOAD

IMMP

:: MORE INFORMATION

Citation

Seo J, Jin D, Choi CH, Lee H.
Integration of MicroRNA, mRNA, and Protein Expression Data for the Identification of Cancer-Related MicroRNAs.
PLoS One. 2017 Jan 5;12(1):e0168412. doi: 10.1371/journal.pone.0168412. PMID: 28056026; PMCID: PMC5215789.

CellFinder 1.5.1 – Study Annotations, Bibliography, Gene and Protein Expression in Stem Cells and Derivatives

CellFinder 1.5.1

:: DESCRIPTION

CellFinder maps validated gene and protein expression, phenotype and images related to cell types. The data allow characterization and comparison of cell types and can be browsed by using the body browser and by searching for cells or genes. All cells are related to more complex systems such as tissues, organs and organisms and arranged according to their position in development.

::DEVELOPER

Computational Biology and Data Mining (CBDM) Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Nucleic Acids Res. 2014 Jan;42(Database issue):D950-8. doi: 10.1093/nar/gkt1264. Epub 2013 Dec 3.
CellFinder: a cell data repository.
Stachelscheid H1, Seltmann S, Lekschas F, Fontaine JF, Mah N, Neves M, Andrade-Navarro MA, Leser U, Kurtz A.

QPROT 1.3.5 – Differential Protein Expression using Spectral Count and Intensity data.

QPROT 1.3.5

:: DESCRIPTION

QPROT is a software for differential protein expression using spectral count and intensity data. It also accounts for independent samples and paired samples.

::DEVELOPER

Proteomics & Integrative Bioinformatics Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 QPROT

:: MORE INFORMATION

Citation:

QPROT: Statistical method for testing differential expression using protein-level intensity data in label-free quantitative proteomics.
Choi H, Kim S, Fermin D, Tsou CC, Nesvizhskii AI.
J Proteomics. 2015 Nov 3;129:121-6. doi: 10.1016/j.jprot.2015.07.036.

Clone Manager 0.1 – Cloning and Protein Expression LIMS

Clone Manager 0.1

:: DESCRIPTION

Clone Manager – the PSF cloning and protein expression system (LIMS) is based on an Oracle database (v. 8.1.6) and a frontend developed with Microsoft Access 97. In addition, some perl scripts and Java programs are used for batch data entry.

::DEVELOPER

Protein Structure Factory

:: REQUIREMENTS

:: DOWNLOAD

Clone Manager

:: MORE INFORMATION

Please contact Konrad Büssow for questions/comments regarding this software.