Asap
:: DESCRIPTION
Asap is an open source framework for promoter analysis based on a fast search engine using enhanced suffix arrays. The framework includes several statistics for calculating over-representation of motifs in a set of promoters from co-regulated genes compared to a background set.
::DEVELOPER
The Bioinformatics Centre , University of Copenhagen
:: SCREENSHOTS
:: REQUIREMENTS
- Linux/ MacOsX
- Python
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Marstrand TT, Frellsen J, Moltke I, Thiim M, Valen E, Retelska D, Krogh A:
Asap: a framework for over-representation statistics for transcription factor binding sites.
PLoS ONE 2008, 3(2):e1623