Palingol 1.3 – Programming Language in the Description of Nucleic Acids Secondary Structures

Palingol 1.3

:: DESCRIPTION

Palingol is a declarative programming language to describe nucleic acids’ secondary structures and to scan sequence databases.

::DEVELOPER

L’Atelier de BioInformatique

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 Palingol

:: MORE INFORMATION

Citation

Billoud, B. Kontic, M. and Viari, A. (1996).
Palingol, a descriptive programming language to describe nucleic acid’s secondary structure and scan sequence databases.
Nucleic Acids Research 24(8) 1395-1404.

SPiM 0.05 / SPiM Player 1.13 – Programming Language for Designing and Simulating Computer Models of Biological Processes

SPiM 0.05 / SPiM Player 1.13

:: DESCRIPTION

The SPiM (Stochastic Pi Machine) is a programming language for designing and simulating computer models of biological processes. The language is based on a mathematical formalism known as the pi-calculus, and the simulation algorithm is based on standard kinetic theory of physical chemistry. The language features a simple graphical notation for modelling a range of biological systems, and can be used to model large systems incrementally, by directly composing simpler models of subsystems.

The SPiM Player is a graphical interface to SPiM

::DEVELOPER

Andrew PhillipsLuca Cardelli, Matthew Lakin, Filippo Polo, Microsoft Research.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

 SPiM / SPiM Player

:: MORE INFORMATION

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