Tag: Profiler

mimiRNA – microRNA Expression Profiler

mimiRNA

:: DESCRIPTION

mimiRNA is an online resource that integrates expression data from 1483 samples and permits visualization of the expression of 635 human miRNAs across 188 different tissues or cell types.

::DEVELOPER

Centenary Institute – Bioinformatics

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Ritchie W, Flamant S, Rasko JE.
mimiRNA: a microRNA expression profiler and classification resource designed to identify functional correlations between microRNAs and their targets.
Bioinformatics. 2010 Jan 15;26(2):223-7. doi: 10.1093/bioinformatics/btp649. Epub 2009 Nov 17. PMID: 19933167.

TRhist 1.0.1 – Tandem Repeat Profiler in Personal Genomes

TRhist 1.0.1

:: DESCRIPTION

TRhist is a tool for finding significat tandem repeats using short reads.

::DEVELOPER

Morishita Laboratory, the University of Tokyo

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • JRE

:: DOWNLOAD

 TRhist

:: MORE INFORMATION

Citation

Bioinformatics. 2014 Mar 15;30(6):815-22. doi: 10.1093/bioinformatics/btt647. Epub 2013 Nov 8.
Rapid detection of expanded short tandem repeats in personal genomics using hybrid sequencing.
Doi K1, Monjo T, Hoang PH, Yoshimura J, Yurino H, Mitsui J, Ishiura H, Takahashi Y, Ichikawa Y, Goto J, Tsuji S, Morishita S.

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